Software

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SCRuB

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(Source-tracking for Contamination Removal in microBiomes).

In silico removal of contamination from (microbial) counts data using process controls.

Austin et al., in prep. 2022

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preSCRuB

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Data-driven simulation-based recommender system for experimental design that improves contamination removal.

Austin et al., in prep. 2022

We also contributed to:

CoPTR

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Efficient and accurate inference of microbial growth rates from metagenomic data.

SVFinder

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Detection of structural variants in microbial genomes using metagenomic data.