(Source-tracking for Contamination Removal in microBiomes).
In silico removal of contamination from (microbial) counts data using process controls.
Austin et al., Nature Biotechnology 2023
A python implementation of mgpipe (Baldini et al., Bioinformatics 2019).
Meydan et al., JOSS 2023
We also contributed to:
Efficient and accurate inference of microbial growth rates from metagenomic data.
Detection of structural variants in microbial genomes using metagenomic data.