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Software
SCRuB
(Source-tracking for Contamination Removal in microBiomes).
In silico removal of contamination from (microbial) counts data using process controls.
Austin et al., Nature Biotechnology 2023
CoPTR
Efficient and accurate inference of microbial growth rates from metagenomic data.
SVFinder
Detection of structural variants in microbial genomes using metagenomic data.
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